PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13310.1.p
Common NameBRADI_1g13310, LOC100844318
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 1064aa    MW: 116188 Da    PI: 5.7244
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1101.67.6e-3273173291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                       fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+           + + rrtra+tr+gCka+++vkk+++gkw +tkle+
  Bradi1g13310.1.p  73 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNeglasspggedSGRGRRTRAVTRVGCKAMIRVKKQDNGKWSITKLET 165
                       *******************************************************99999********************************* PP

              FAR1  84 eHnHelap 91 
                        HnH+l+p
  Bradi1g13310.1.p 166 AHNHPLVP 173
                       *****986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-3073173IPR004330FAR1 DNA binding domain
PfamPF105515.0E-24291381IPR018289MULE transposase domain
PROSITE profilePS5096610.237569605IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-9575604IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-5580607IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1064 aa     Download sequence    Send to blast
MERGAAGSDQ GTPDSEMGDA DNDSVGYGTE MELDAGNGST GAPPAYAARP SVHDGIDPFE  60
GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG FRTYRGKNEG  120
LASSPGGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGKWSI TKLETAHNHP LVPQNQAHCL  180
RPHKPLSECG KQRSYGVRRN GGMFLAIEPP PPPLTPPVPQ TSIAQLVPHY IGDGIGNAAR  240
VILDYVKRMQ AEDPAFFYAM QFVEGHPVGN VFWSDARARM AFKDFGDAVF LDDYCKRNKY  300
ELPLVTFTGV NHHCQPVLFG CAVIRDNSEA SFVWLFETLL LAMSGQHPAS LTTEYDGAMQ  360
SAIQKVLPQT RHRFCRWHIL NEAQYKLSHF VNAFPSFHDD LVNCINISET VDEFEANWQA  420
LISKVGSGNN EWLDLMYNCR QQWVPVYLRD TFFGDEPSRQ ECTSRSSFFE SYIIAKTNSQ  480
SFIQQYEKAL DSCYEKEVRE EFETKYSLPD IKTSSPIEKH GADLYTRTMF LKFQQELIDA  540
SAFTLEMVGE DRKACMYKVT TSQGSGKPHM VEFSSSESSA KCSCQMFEYF GIVCRHILTV  600
FGARGVLTLP SQYIVKRWTK DAIDRCSNKK FDDVSRAKEP KEEQRSNVED GEQSQTWRYN  660
SLCREALRYA EEGASSAEVY IVAMQALEEA ANKVNMVKRS VGQVAPLAVM PIAAQPPESS  720
RKNQDSFGQP KKRKRNSNNS RENSAPTQSM YTQQPVNFPS TSNGSQGPSQ VVAAAPISLC  780
TEYRQTSGAN NSTDGSTTPA SVAVNKLYGL SDRGASTSAP SSSANVLQGG ETKSSGIASQ  840
INEGHELSQA NGNKGGDIDM ANSTASPQLV TVPIGFCMPS VDNSKTSTAG INSSNSGGVM  900
SNGNASFGLH QSQSSAQVPA THPEAKTRLN NIDSPATPEG SSIRAAAIAA GARIASPSDA  960
ASIIKASQSK GAIHIRPGKS LPNYLKPLTP KPLSSLPPVN LTSSGNASSS HMQLGQFYSG  1020
DSAAAKDSIF GSTDGSDEDT DDDDEDSDDD DDERLTGDEV EQE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559622.30.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLI1GPV50.0I1GPV5_BRADI; Uncharacterized protein
STRINGBRADI1G13310.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-166FAR1-related sequence 5